MCP Server
Automate data science stages using your own CSV data files.
Auto ML - Automated Machine Learning Platform
An intelligent automated machine learning platform that provides comprehensive data analysis, preprocessing, model selection, and hyperparameter tuning capabilities through Model Context Protocol (MCP) tools.
🚀 Features
📊 Data Analysis & Exploration
- Data Information: Get comprehensive dataset statistics including shape, memory usage, data types, and missing values
- CSV Reading: Efficient CSV file reading with pandas and pyarrow support
- Correlation Analysis: Visualize correlation matrices for numerical and categorical variables
- Outlier Detection: Identify and visualize outliers in your datasets
🔧 Data Preprocessing
- Automated Preprocessing: Handle missing values, encode categorical variables, and scale numerical features
- Feature Engineering: Prepare features for both regression and classification problems
- Data Validation: Check for duplicates and data quality issues
🤖 Machine Learning Models
- Multiple Algorithms: Support for various ML algorithms including:
- Regression: Linear Regression, Ridge, Lasso, ElasticNet, Random Forest, XGBoost, SVR, KNN, CatBoost
- Classification: Logistic Regression, Ridge Classifier, Random Forest, XGBoost, SVM, KNN, Decision Tree, Naive Bayes, CatBoost
📈 Model Evaluation & Visualization
- Performance Metrics:
- Regression: R², MAE, MSE
- Classification: Accuracy, F1-Score
- Confusion Matrix Visualization: For classification problems
- Model Comparison: Compare multiple models side-by-side
⚙️ Hyperparameter Tuning
- Automated Tuning: Optimize model hyperparameters using advanced search algorithms
- Customizable Scoring: Choose from various evaluation metrics
- Trial Management: Control the number of optimization trials
📁 Project Structure
AutoML/
├── data/ # Sample datasets
│ ├── Ai.csv
│ ├── Calories.csv
│ ├── Cost.csv
│ ├── Digital.csv
│ ├── Electricity.csv
│ ├── ford.csv
│ ├── Habits.csv
│ ├── heart.csv
│ ├── Lifestyle.csv
│ ├── Mobiles.csv
│ ├── Personality.csv
│ ├── Salaries.csv
│ ├── Shopper.csv
│ ├── Sleep.csv
│ ├── cat.csv
│ ├── test.csv
│ └── train.csv
├── tools/
│ └── all_tools.py # MCP tool definitions
├── utils/
│ ├── before_model.py # Feature preparation
│ ├── details.py # Data information
│ ├── external_test.py # External data test with XGBoost
│ ├── feature_importance.py # Feature importance analysis
│ ├── hyperparameter.py # Hyperparameter tuning
│ ├── model_selection.py # Model selection and evaluation
│ ├── prediction.py # Prediction utilities
│ ├── preprocessing.py # Data preprocessing
│ ├── read_csv_file.py # CSV reading utilities
│ └── visualize_data.py # Visualization functions
├── main.py # Application entry point
├── server.py # MCP server configuration
├── requirements.txt # Python dependencies
└── README.md # This file
🛠️ Installation
Prerequisites
- Python 3.8 or higher
- pip or uv package manager
Setup
-
Clone the repository
git clone https://github.com/emircansoftware/AutoML.git cd AutoML -
Install dependencies
# Using pip pip install -r requirements.txt pip install uv
Using with Claude Desktop
1. Data Path Setting
In utils/read_csv_file.py, update the path variable to match your own project directory on your computer:
# Example:
path = r"C:\\YOUR\\PROJECT\\PATH\\AutoML\\data"
2. Claude Desktop Configuration
In Claude Desktop, add the following block to your claude_desktop_config.json file and adjust the paths to match your own system:
{
"mcpServers": {
"AutoML": {
"command": "uv",
"args": [
"--directory",
"C:\\YOUR\\PROJECT\\PATH\\AutoML",
"run",
"main.py"
]
}
}
}
You can now start your project from Claude Desktop.
📋 Dependencies
- MCP Framework:
mcp[cli]>=1.9.4- Model Context Protocol for tool integration - Data Processing:
pandas>=2.3.0,pyarrow>=20.0.0,numpy>=2.3.1 - Machine Learning:
scikit-learn>=1.3.0,xgboost>=2.0.0,lightgbm>=4.3.0 - Additional ML:
catboost(for CatBoost models)
🎯 Usage
Starting the MCP Server
from server import mcp
# Run the server
mcp.run()
Available Tools
The platform provides the following MCP tools:
Data Analysis Tools
information_about_data(file_name): Give detailed information about the datareading_csv(file_name): Read the csv filevisualize_correlation_num(file_name): Visualize the correlation matrix for numerical columnsvisualize_correlation_cat(file_name): Visualize the correlation matrix for categorical columnsvisualize_correlation_final(file_name, target_column): Visualize the correlation matrix after preprocessingvisualize_outliers(file_name): Visualize outliers in the datavisualize_outliers_final(file_name, target_column): Visualize outliers after preprocessing
Preprocessing Tools
preprocessing_data(file_name, target_column): Preprocess the data (remove outliers, fill nulls, etc.)prepare_data(file_name, target_column, problem_type): Prepare the data for models (encoding, scaling, etc.)
Model Training & Evaluation
models(problem_type, file_name, target_column): Select and evaluate models based on problem typevisualize_accuracy_matrix(file_name, target_column, problem_type): Visualize the confusion matrix for predictionsbest_model_hyperparameter(model_name, file_name, target_column, problem_type, n_trials, scoring, random_state): Tune the hyperparameters of the best modeltest_external_data(main_file_name, target_column, problem_type, test_file_name): Test external data with the best model and return predictionspredict_value(model_name, file_name, target_column, problem_type, n_trials, scoring, random_state, input): Predict the value of the target column for new inputfeature_importance_analysis(file_name, target_column, problem_type): Analyze the feature importance of the data using XGBoost
Example Workflow
# 1. Analyze your data
info = information_about_data("data/heart.csv")
# 2. Preprocess the data
preprocessed = preprocessing_data("data/heart.csv", "target")
# 3. Prepare features for classification
features = prepare_data("data/heart.csv", "target", "classification")
# 4. Train and evaluate models
results = models("classification", "data/heart.csv", "target")
# 5. Visualize results
confusion_matrix = visualize_accuracy_matrix("data/heart.csv", "target", "classification")
# 6. Optimize best model
best_model = best_model_hyperparameter("RandomForestClassifier", "data/heart.csv", "target", "classification", 100, "accuracy", 42)
📊 Sample Datasets (All CSV datasets are from Kaggle.)
The project includes various sample datasets for testing:
- heart.csv: Heart disease prediction dataset
- Salaries.csv: Salary prediction dataset
- Calories.csv: Calorie prediction dataset
- Personality.csv: Personality analysis dataset
- Digital.csv: Digital behavior dataset
- Lifestyle.csv: Lifestyle analysis dataset
- Mobiles.csv: Mobile phone dataset
- Habits.csv: Habit analysis dataset
- Sleep.csv: Sleep pattern dataset
- Cost.csv: Cost analysis dataset
- ford.csv: Ford car dataset
- Ai.csv: AI-related dataset
- cat.csv: Cat-related dataset
🔧 Configuration
Environment Variables
- Set your preferred random seed for reproducible results
- Configure MCP server settings in
server.py
Customization
- Add new ML algorithms in
utils/model_selection.py - Extend preprocessing steps in
utils/preprocessing.py - Create custom visualization functions in
utils/visualize_data.py
🤝 Contributing
We welcome contributions! Please feel free to submit a Pull Request. For major changes, please open an issue first to discuss what you would like to change.
Contributing Guidelines
- Fork the repository
- Create a feature branch (
git checkout -b feature/AmazingFeature) - Commit your changes (
git commit -m 'Add some AmazingFeature') - Push to the branch (
git push origin feature/AmazingFeature) - Open a Pull Request
📝 License
This project is licensed under the MIT License - see the LICENSE file for details.
🙏 Acknowledgments
- Model Context Protocol for the MCP framework
- scikit-learn for machine learning algorithms
- XGBoost for gradient boosting
- CatBoost for categorical boosting
- pandas for data manipulation
📞 Support
If you encounter any issues or have questions:
- Check the Issues page
- Create a new issue with detailed information
- Contact the maintainers
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