Ookcite MCP

OokCite MCP Server

Give MCP-capable tools the ability to validate DOIs, format citations, manage bibliography collections, and catch fabricated references. Returns citation metadata only -- not PDFs or full-text articles. Works with clients that support MCP servers over standard input and output.

Quick Start

One command to install and configure:

npx @turtletech/ookcite-mcp setup

This auto-detects supported MCP clients and writes the configuration for you. Connect an OokCite account for higher rate limits and collection tools without putting an API key in shell arguments or MCP configuration:

npx @turtletech/ookcite-mcp setup --connect

The command opens the TurtleTech dashboard, creates or activates the Free plan, stores the issued key in the platform credential store, and writes only a credential reference to detected clients. Use setup --connect --device on a headless machine.

An existing API key remains supported:

npx @turtletech/ookcite-mcp setup --key YOUR_API_KEY

No API key required for basic usage (20 lookups/day). Sign up for more.

After changing MCP config, restart the client or reload its MCP servers. Many clients do not hot-reload environment-variable changes for already-running stdio servers.

Install (Alternative Methods)

npm (recommended):

npm install -g @turtletech/ookcite-mcp

cargo-binstall (fastest, no Node.js):

cargo binstall ookcite-mcp

cargo install (from source):

cargo install ookcite-mcp

Pre-built binaries: Download from GitHub Releases for Linux (x86_64, aarch64), macOS (x86_64, aarch64), and Windows.

Configure

If you used setup, you're done. Otherwise, add to your MCP client config:

{
  "mcpServers": {
    "ookcite": {
      "command": "npx",
      "args": ["-y", "@turtletech/ookcite-mcp"]
    }
  }
}

With an API key:

{
  "mcpServers": {
    "ookcite": {
      "command": "npx",
      "args": ["-y", "@turtletech/ookcite-mcp"],
      "env": {
        "OOKCITE_API_KEY": "your_key_here"
      }
    }
  }
}

If you installed globally (npm install -g or cargo install), you can use "command": "ookcite-mcp" directly instead of npx.

Keeping the key out of the config file

setup --connect uses the platform credential store by default. It refuses to replace an existing platform credential or named OokCite MCP configuration unless --replace-credential or --replace-config is given explicitly.

A generic credential manager can be used instead. The store command receives the new key on standard input; it must not expect the key in a command-line argument. The retrieval command prints the key on standard output when the MCP server starts:

npx @turtletech/ookcite-mcp setup --connect \
  --store-command "credential-cli store ookcite" \
  --retrieve-command "credential-cli read ookcite"

For an explicit owner-only file instead of a credential manager:

npx @turtletech/ookcite-mcp setup --connect \
  --credential-file "$HOME/.config/ookcite/api-key"

The file is created with owner-only permissions and is never overwritten. The platform, helper-command, and file forms put references such as these in client configuration:

{
  "mcpServers": {
    "ookcite": {
      "command": "npx",
      "args": ["-y", "@turtletech/ookcite-mcp"],
      "env": {
        "OOKCITE_API_KEY_COMMAND": "credential-cli read ookcite"
      }
    }
  }
}

At startup, source precedence remains OOKCITE_API_KEY, OOKCITE_API_KEY_COMMAND, OOKCITE_API_KEY_FILE, then the platform credential reference. With none of them the server starts anonymous. setup --key remains available for existing deployments that intentionally keep the key in client configuration.

Credential retrieval obeys two constraints:

• Retrieval receives closed standard input, so it cannot consume MCP JSON-RPC.
• Retrieval is bounded by OOKCITE_API_KEY_TIMEOUT, which defaults to 10 seconds, and its output is never copied into diagnostics.

Consult your client's MCP documentation for its configuration-file location. Use the mcpServers.ookcite JSON above when automatic setup is unavailable, then restart the client or reload its MCP servers.

Optional env (stdio MCP, all clients):

Variable	Purpose
OOKCITE_API_KEY	Higher rate limits + collection tools (optional for basic lookup/format)
OOKCITE_API	Override API base URL (default https://ookcite-api.turtletech.us)
OOKCITE_MCP_READ_ONLY	1 hard-disables collection mutations (review / CI automation)
OOKCITE_MCP_ALLOW_MUTATE	0 denies mutations; unset or 1 allows (API key still required server-side)
OOKCITE_STARTUP_PROBES	1 runs auth + npm update checks on stderr before accepting MCP connections (default off for faster connect)
OOKCITE_API_KEY_COMMAND	Command printing the key on stdout; stdin is closed
OOKCITE_API_KEY_FILE	Owner-protected file whose first line is the key
OOKCITE_API_KEY_TIMEOUT	Seconds allowed for credential retrieval (default 10)
OOKCITE_CREDENTIAL_STORE	platform to load a platform credential reference
OOKCITE_CREDENTIAL_SERVICE	Platform credential service name (default ookcite-mcp)
OOKCITE_CREDENTIAL_ACCOUNT	Platform credential account name (default default)

MCP usage tips

• Prefer batch tools (verify_references, batch_format, batch_add_to_collection, import_bibliography) over many single-citation calls.
• Collection mutations require OOKCITE_API_KEY. Destructive tools (delete_collection, remove_from_collection, unshare_collection) are annotated for clients that honor MCP tool hints.
• The server writes diagnostics to stderr only on the MCP path; stdout is reserved for JSON-RPC.

Tools

Lookup & Validation

Tool	Purpose
validate_doi	Check if a DOI exists (anti-hallucination)
lookup_isbn	Look up a book by ISBN
reverse_lookup	Find a paper from messy citation text
batch_resolve	Resolve many citation strings in one request (max 50)
enhanced_search	Corpus search with author / category / citation facets
health_check	Check API availability and health

Formatting

Tool	Purpose
format_citation	Format a DOI in any of 2900+ CSL styles
verify_references	Batch-check a list of DOIs
batch_format	Format multiple citations at once
search_styles	Find CSL style IDs by name
list_styles	Page through the full CSL style list
group_cite	Generate grouped in-text markers (e.g. [1-3])

Account

Tool	Purpose
usage	Plan in effect plus daily (and monthly) lookups remaining

ORCID

Tool	Purpose
orcid_search	Find ORCID profiles by name, affiliation, or ORCID ID
orcid_profile	Fetch one ORCID profile by ID
ingest_orcid	Index an ORCID profile's publications so they are searchable

Collections (requires sign-in)

Collections are a signed-in feature. Set OOKCITE_API_KEY to use these tools.

Tool	Purpose
list_collections	List saved citation collections
add_to_collection	Add a citation (by DOI or free-text)
batch_add_to_collection	Add multiple citations at once
import_bibliography	Import BibTeX/RIS files into a collection
export_collection	Export collection as BibTeX
search_collection	Search within a collection; returns entry_id per match
check_duplicates	Check for duplicates; returns entry_id for matches
delete_collection	Delete a collection
update_collection	Update name, description, or style
remove_from_collection	Remove an entry by entry_id, bare DOI, or doi:10.x/y
update_entry_metadata	Correct a saved entry's title, authors, year, DOI, …
merge_entries	Merge two entries of one collection into one
update_tags	Set tags on a collection
reorder_collection	Reorder entries

Typical workflow:

1. Keep references.bib or library.bib under version control in your project
2. Import that file into an OokCite collection with import_bibliography
3. Use search_collection, check_duplicates, and export_collection while revising
4. Treat the collection as an audit/export companion, not the only copy of your bibliography

Removing a single entry: call search_collection (or check_duplicates) to see each hit as entry_id: … (and optionally aliases: doi:… when the stored id is opaque). Pass that entry_id to remove_from_collection, or pass the paper's bare DOI / doi:10.x/y — the server resolves aliases locally before the API call.

Sharing & Collection Operations

Tool	Purpose
share_collection	Create a shareable link
unshare_collection	Revoke sharing
view_shared	View a shared collection by token
merge_collections	Merge multiple collections
batch_move_entries	Move entries between collections

Sharing is available to signed-in accounts with collections. Free accounts can import and batch-add within their daily quota. Merge and batch-move require an Academic or Business plan.

Utilities

Tool	Purpose
generate_citation_keys	Better BibTeX-style keys for a list of DOIs
expand_journal	Expand a journal abbreviation to its full name
normalize_bibliography	Re-render BibTeX or RIS as canonical BibTeX

These three require an Academic or Business plan.

Plans & Pricing

Tier	Price	Lookups/day	API calls/month	Collections	Entries/collection
Anonymous	Free	20	--	0	--
Free	Free	60	--	4	200
Academic	EUR 4/mo	20,000	10,000	10	1,000
Business	EUR 10/mo	20,000	40,000	20	4,000

Re-lookups can be served without quota use when collection metadata is already available to the API. A retrieval that has to resolve the paper again can count against the current plan's quota. Paid Academic checkout is intended for students, researchers, and educators at accredited institutions; a verified ORCID can also qualify a signed-in account for Academic limits.

Anti-Hallucination

Add this to your system prompt:

Before citing any paper, use validate_doi to confirm the reference exists. If validation fails, do not include the citation.

For revision workflows, add:

Keep the project bibliography in a local .bib file under version control. Use OokCite collections for verification, deduplication, and export.

How It Works

The MCP server connects to the public OokCite API to look up and format citations. It's a thin MCP wrapper around the OokCite REST API with no local database, and no heavy dependencies.

Sign up for a free account (60 lookups/day), or upgrade to Academic (EUR 4/mo) or Business (EUR 10/mo) for higher monthly API limits, larger collections, paid utilities, merge, and batch-move.

Source layout

The crate is a thin MCP (stdio) wrapper around the public OokCite REST API. There is no local citation database; all state lives on the API.

Path	Role
src/main.rs	Binary entry: --version, setup, start MCP server
src/cli.rs	Startup probes (validate OOKCITE_API_KEY via /api/v1/me, update check)
src/setup.rs	ookcite-mcp setup / npx add-mcp client config installer
src/server.rs	Server + #[tool_router] MCP tool handlers (plus unit tests at bottom)
src/tool_args.rs	Tool argument structs (serde + schemars)
src/constants.rs	API base URL, package version, reverse-lookup confidence threshold
src/http_error.rs	error_detail and HTTP status classification for client-facing strings
src/collection_entries.rs	Collection entry ids, bare DOI / doi: alias resolution, search lines
src/resolve_helpers.rs	Reverse-lookup and free-text resolve payload helpers
src/endpoints.rs	Endpoint registry (lib crate surface); contract-tested
src/lib.rs	Library root (exports endpoints only)
tests/api_contract.rs	Decrypts contract/openapi.json.age; asserts every endpoint exists
contract/	Age-encrypted OpenAPI snapshot + regen.sh
npm/	@turtletech/ookcite-mcp installer/wrapper (downloads release binary)
demo/	Asciinema recording scripts
scripts/set-version.sh	Cocogitto pre-bump hook: Cargo.toml + npm/package.json version

Collections / entry ids: search_collection and check_duplicates emit entry_id: … lines. remove_from_collection accepts that id, a bare DOI, or doi:10.x/y (resolved locally in collection_entries before the DELETE call).

Release: tag v* runs .github/workflows/release.yml (multi-arch GitHub Release assets, crates.io, npm). Version bumps use cocogitto (cog.toml + scripts/set-version.sh).

Why server.rs is large: rmcp's #[tool_router] / #[tool] macros keep handlers on one impl Server. Further file splits without macro workarounds add little user value; peel tests or add small helpers (resolve_many, shared Me type) before fighting the macro.

Contributing / local checks

cargo test --bin ookcite-mcp          # unit tests (no contract key needed)
cargo build --release
./target/release/ookcite-mcp --version

# Contract tests (optional locally; required in CI with secret):
export OOKCITE_CONTRACT_KEY="value-from-your-credential-manager"
cargo test --test api_contract

Live MCP smoke (optional; needs OOKCITE_API_KEY): add/search/remove with a bare DOI on a throwaway collection, then delete_collection.

Documentation

• Full MCP setup guide
• OokCite app
• TurtleTech

License

MIT. see LICENSE.