Alliance of Genome Resources (JS)

A high-performance JavaScript server for the Alliance of Genome Resources (AGR) MCP.

AGR MCP Server

MCP server for querying Alliance of Genome Resources - genomics data across model organisms.

No installation required. Add to your MCP client config:

{
  "mcpServers": {
    "agr-genomics": {
      "command": "npx",
      "args": ["-y", "agr-mcp-server"]
    }
  }
}

npm install -g agr-mcp-server

Then use in your config:

{
  "mcpServers": {
    "agr-genomics": {
      "command": "agr-mcp-server"
    }
  }
}

Client	Config path
Claude Desktop (macOS)	`~/Library/Application Support/Claude/claude_desktop_config.json`
Claude Desktop (Windows)	`%APPDATA%\Claude\claude_desktop_config.json`
Claude Code	`~/.claude/settings.json`
Cursor	Settings > MCP Servers
Windsurf	`~/.codeium/windsurf/mcp_config.json`

Ask questions naturally:

Human, mouse, rat, zebrafish, fly, worm, yeast, xenopus

Tool	Description
`search_genes`	Search genes with optional species filter
`get_gene_info`	Detailed gene information (symbol, location, synonyms)
`get_gene_diseases`	Disease associations for a gene
`search_diseases`	Search diseases by name
`get_gene_expression`	Expression data across tissues/stages
`find_orthologs`	Cross-species homologs
`get_gene_phenotypes`	Phenotype annotations
`get_gene_interactions`	Molecular and genetic interactions
`get_gene_alleles`	Alleles/variants for a gene
`search_alleles`	Search alleles by name
`get_species_list`	List supported model organisms

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