Stop Feeding Documentation Trees to Your AI

Most AI agents still explore documentation the expensive way:

open file → skim hundreds of irrelevant paragraphs → open another file → repeat

That burns tokens, floods context windows with noise, and forces models to reason through a lot of text they never needed in the first place.

jDocMunch-MCP lets AI agents navigate documentation by section instead of reading files by brute force.
It indexes a documentation set once, then retrieves exactly the section the agent actually needs, with byte-precise extraction from the original file.

Task	Traditional approach	With jDocMunch
Find a configuration section	~12,000 tokens	~400 tokens
Browse documentation structure	~40,000 tokens	~800 tokens
Explore a full doc set	~100,000 tokens	~2,000 tokens

Index once. Query cheaply forever.
Precision context beats brute-force context.

---

jDocMunch MCP

AI-native documentation navigation for serious agents

Commercial licenses

jDocMunch-MCP is free for non-commercial use.

Commercial use requires a paid license.

jDocMunch-only licenses

• Builder — $29 — 1 developer
• Studio — $99 — up to 5 developers
• Platform — $499 — org-wide internal deployment

Want both code and docs retrieval?

• Munch Duo Builder Bundle — $89
• Munch Duo Studio Bundle — $399
• Munch Duo Platform Bundle — $2,249

Stop dumping documentation files into context windows. Start navigating docs structurally.

jDocMunch indexes documentation once by heading hierarchy and section structure, then gives MCP-compatible agents precise access to the explanations they actually need instead of forcing them to brute-read files.

It is built for workflows where token efficiency, context hygiene, and agent reliability matter.

---

Why this exists

Large context windows do not fix bad retrieval.

Agents waste money and reasoning bandwidth when they:

• open entire documents to find one configuration block
• repeatedly re-read headings, boilerplate, and unrelated sections
• lose important explanations inside oversized context payloads
• consume documentation as flat text instead of structured knowledge

jDocMunch fixes that by changing the unit of access from file to section.

Instead of handing an agent an entire document, it can retrieve exactly:

• an installation section
• a configuration section
• an API explanation
• a troubleshooting section
• a specific subtree of related headings

That makes documentation exploration cheaper, faster, and more stable.

---

What makes it different

Section-first retrieval

Search and retrieve documentation by section, not just file path or keyword match.

Byte-precise extraction

Full content is pulled on demand from exact byte offsets into the original file.

Stable section IDs

Sections retain durable identities across re-indexing when path, heading text, and heading level remain unchanged.

Local-first architecture

Indexes and raw docs are stored locally. No hosted dependency required.

MCP-native workflow

Works with Claude Desktop, Claude Code, Google Antigravity, and other MCP-compatible clients.

---

What gets indexed

Every section stores:

• title and heading level
• one-line summary
• extracted tags and references
• SHA-256 content hash for drift detection
• byte offsets into the original file

This allows agents to discover documentation structurally, then request only the specific section they need.

---

Why agents need this

Traditional doc retrieval methods all break in different ways:

• File scanning loads far too much irrelevant text
• Keyword search finds terms but often loses context
• Chunking breaks authored hierarchy and separates explanations from examples

jDocMunch preserves the structure the human author intended:

• heading hierarchy
• parent/child relationships
• section boundaries
• coherent explanatory units

Agents do not need bigger context windows.
They need better navigation.

---

How it works

jDocMunch implements jMRI-Full — the open specification for structured retrieval MCP servers. jMRI-Full covers the full stack: discover, search, retrieve, and metadata operations with batch retrieval, hash-based drift detection, byte-offset addressing, and a complete _meta envelope on every call.

1. Discovery GitHub API or local directory walk

2. Security filtering Traversal protection, secret exclusion, binary detection

3. Parsing Format-aware section splitting: heading-based (Markdown/MDX/HTML/RST/AsciiDoc), structure-based (OpenAPI tags, JSON keys, XML elements), or cell-based (Jupyter)

4. Hierarchy wiring Parent/child relationships established

5. Summarization Heading text → AI batch summaries → title fallback

6. Storage JSON index + raw files stored locally under ~/.doc-index/

7. Retrieval O(1) byte-offset seeking via stable section IDs

---

Stable section IDs

{repo}::{doc_path}::{ancestor-chain/slug}#{level}

The slug is prefixed with the ancestor heading chain, making IDs both readable and stable. A new heading inserted in one branch of a document never renumbers IDs in another branch.

Examples:

• owner/repo::docs/install.md::installation#1
• owner/repo::docs/install.md::installation/prerequisites#3
• owner/repo::README.md::usage/configuration/advanced-configuration#4
• local/myproject::guide.md::configuration#2

IDs remain stable across re-indexing when the file path, heading text, heading level, and parent heading chain do not change.

---

Installation

Prerequisites

• Python 3.10+
• pip

Install

pip install jdocmunch-mcp

Verify:

jdocmunch-mcp --help

---

Configure an MCP client

PATH note: MCP clients often run with a restricted environment where jdocmunch-mcp may not be found even if it works in your shell. Using uvx is the recommended approach because it resolves the package on demand without relying on your system PATH. If you prefer pip install, use the absolute path to the executable instead.

Common executable paths

• Linux: /home/<username>/.local/bin/jdocmunch-mcp
• macOS: /Users/<username>/.local/bin/jdocmunch-mcp
• Windows: C:\\Users\\<username>\\AppData\\Roaming\\Python\\Python3xx\\Scripts\\jdocmunch-mcp.exe

---

Claude Desktop / Claude Code

Config file location:

OS	Path
macOS	~/Library/Application Support/Claude/claude_desktop_config.json
Linux	~/.config/claude/claude_desktop_config.json
Windows	%APPDATA%\Claude\claude_desktop_config.json

Minimal config

{
  "mcpServers": {
    "jdocmunch": {
      "command": "uvx",
      "args": ["jdocmunch-mcp"]
    }
  }
}

With optional AI summaries and GitHub auth

{
  "mcpServers": {
    "jdocmunch": {
      "command": "uvx",
      "args": ["jdocmunch-mcp"],
      "env": {
        "GITHUB_TOKEN": "ghp_...",
        "ANTHROPIC_API_KEY": "sk-ant-..."
      }
    }
  }
}

After saving the config, restart Claude Desktop / Claude Code.

---

Google Antigravity

1. Open the Agent pane
2. Click the ⋯ menu → MCP Servers → Manage MCP Servers
3. Click View raw config to open mcp_config.json
4. Add the entry below, save, then restart the MCP server

{
  "mcpServers": {
    "jdocmunch": {
      "command": "uvx",
      "args": ["jdocmunch-mcp"]
    }
  }
}

---

Usage examples

index_local:          { "path": "/path/to/docs" }
index_repo:           { "url": "owner/repo" }

get_toc:              { "repo": "owner/repo" }
get_toc_tree:         { "repo": "owner/repo" }
get_document_outline: { "repo": "owner/repo", "doc_path": "docs/config.md" }
search_sections:      { "repo": "owner/repo", "query": "authentication" }
get_section:          { "repo": "owner/repo", "section_id": "owner/repo::docs/config.md::authentication#1" }

---

Tool surface

Tool	Purpose
index_local	Index a local documentation folder
index_repo	Index a GitHub repository’s docs
list_repos	List indexed documentation sets
get_toc	Flat section list in document order
get_toc_tree	Nested section tree per document
get_document_outline	Section hierarchy for one document
search_sections	Weighted search returning summaries only
get_section	Full content of one section
get_sections	Batch content retrieval
get_section_context	Section + ancestor headings + child summaries
delete_index	Remove a doc index

Search and retrieval tools include a _meta envelope with timing, token savings, and cost avoided.

Example:

"_meta": {
  "latency_ms": 12,
  "sections_returned": 5,
  "tokens_saved": 1840,
  "total_tokens_saved": 94320,
  "cost_avoided": { "claude_opus": 0.0276, "gpt5_latest": 0.0184 },
  "total_cost_avoided": { "claude_opus": 1.4148, "gpt5_latest": 0.9432 }
}

total_tokens_saved and total_cost_avoided accumulate across tool calls and persist to ~/.doc-index/_savings.json.

---

Supported formats

Format	Extensions	Notes
Markdown	.md, .markdown	ATX (# Heading) and setext headings
MDX	.mdx	JSX tags, frontmatter, import/export stripped before parsing
Plain text	.txt	Paragraph-block section splitting
reStructuredText	.rst	Adornment-based heading detection
AsciiDoc	.adoc	= and == heading hierarchy
Jupyter Notebook	.ipynb	Markdown cells used as sections; code cells attached as content
HTML	.html	<h1>–<h6> headings; boilerplate stripped
OpenAPI / Swagger	.yaml, .yml, .json, .jsonc	OpenAPI 3.x and Swagger 2.x; operations grouped by tag as sections
JSON / JSONC	.json, .jsonc	Top-level keys as sections; JSONC comments stripped before parsing
XML / SVG / XHTML	.xml, .svg, .xhtml	Element hierarchy used for section structure

See ARCHITECTURE.md for parser details.

---

Security

Built-in protections include:

• path traversal prevention
• symlink escape protection
• secret file exclusion (.env, *.pem, and similar)
• binary file detection
• configurable file size limits
• storage path injection prevention via _safe_content_path()
• atomic index writes

See SECURITY.md for details.

---

Best use cases

• agent-driven documentation exploration
• finding configuration and API reference sections
• onboarding to unfamiliar frameworks
• token-efficient multi-agent documentation workflows
• large documentation sets with dozens of files

---

Not intended for

• source code symbol indexing (use jCodeMunch for that)
• real-time file watching
• cross-repository global search
• semantic/vector similarity search as a standalone product (semantic search is supported as an enhancement when embeddings are enabled via use_embeddings=true, but the core workflow is structure-first)

---

Environment variables

Variable	Purpose	Required
GITHUB_TOKEN	GitHub API auth	No
ANTHROPIC_API_KEY	Section summaries via Claude Haiku	No
GOOGLE_API_KEY	Section summaries via Gemini Flash; also Gemini embeddings	No
OPENAI_API_KEY	OpenAI embeddings (text-embedding-3-small)	No
JDOCMUNCH_EMBEDDING_PROVIDER	Force provider: gemini, openai, sentence-transformers, none	No
JDOCMUNCH_ST_MODEL	sentence-transformers model (default: all-MiniLM-L6-v2)	No
DOC_INDEX_PATH	Custom cache path	No
JDOCMUNCH_SHARE_SAVINGS	Set to 0 to disable anonymous community token savings reporting	No

---

Community savings meter

Each tool call can contribute an anonymous delta to a live global counter at j.gravelle.us. Only two values are sent:

• tokens saved
• a random anonymous install ID

No content, file paths, repo names, or identifying material are sent.

The anonymous install ID is generated once and stored in ~/.doc-index/_savings.json.

To disable reporting, set:

JDOCMUNCH_SHARE_SAVINGS=0

---

Contributing

PRs welcome! All contributors must sign the Contributor License Agreement before their PR can be merged — CLA Assistant will prompt you automatically. See CONTRIBUTING.md for details.

---

Documentation

• USER_GUIDE.md
• ARCHITECTURE.md
• SPEC.md
• SECURITY.md
• TOKEN_SAVINGS.md

---

License (dual use)

This repository is free for non-commercial use under the terms below. Commercial use requires a paid commercial license.

---

Star History

<a href="https://www.star-history.com/?repos=jgravelle%2Fjdocmunch-mcp&type=date&legend=top-left"> <picture> <source media="(prefers-color-scheme: dark)" srcset="https://api.star-history.com/image?repos=jgravelle/jdocmunch-mcp&type=date&theme=dark&legend=top-left" /> <source media="(prefers-color-scheme: light)" srcset="https://api.star-history.com/image?repos=jgravelle/jdocmunch-mcp&type=date&legend=top-left" /> <img alt="Star History Chart" src="https://api.star-history.com/image?repos=jgravelle/jdocmunch-mcp&type=date&legend=top-left" /> </picture> </a>

---

Copyright and license text

Copyright (c) 2026 J. Gravelle

1. Non-commercial license grant (free)

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to use, copy, modify, merge, publish, and distribute the Software for personal, educational, research, hobby, or other non-commercial purposes, subject to the following conditions:

1. The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
2. Any modifications made to the Software must clearly indicate that they are derived from the original work, and the name of the original author (J. Gravelle) must remain intact. He's kinda full of himself.
3. Redistributions of the Software in source code form must include a prominent notice describing any modifications from the original version.

2. Commercial use

Commercial use of the Software requires a separate paid commercial license from the author.

“Commercial use” includes, but is not limited to:

• use of the Software in a business environment
• internal use within a for-profit organization
• incorporation into a product or service offered for sale
• use in connection with revenue generation, consulting, SaaS, hosting, or fee-based services

For commercial licensing inquiries: [email protected] https://j.gravelle.us

Until a commercial license is obtained, commercial use is not permitted.

3. Disclaimer of warranty

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NONINFRINGEMENT.

IN NO EVENT SHALL THE AUTHOR OR COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.