Enzyme

Enzyme turns your Obsidian or markdown vault into a semantic graph that AI can explore. It maps your tags, links, and folder patterns into entities, tracks when you last engaged each thread, and generates catalysts—questions tuned to surface what's latent in your notes.

Arts of the Working Class"What if art criticism did not understand itself as a site of judgment, but as a practice of midwifery?" #editorial Frederick Buechner"a deeper, slower kind of remembering; it means remembering as a searching and finding." #editorial Venkatesh Rao - Text as Toys"The primary mood of the medium is playfulness. The message is let's play." #ai-ux Therese Schroeder-Sheker - Becoming Harpistic"All the teachers ever needed arrive unbidden, if we allow ourselves to become present." #capture Mat Dryhurst"Art is a consensus network between humans. It's not pictures or whatever." #storytelling

Arts of the Working Class"What if art criticism did not understand itself as a site of judgment, but as a practice of midwifery?" #editorialFrederick Buechner"a deeper, slower kind of remembering; it means remembering as a searching and finding." #editorialVenkatesh Rao - Text as Toys"The primary mood of the medium is playfulness. The message is let's play." #ai-uxTherese Schroeder-Sheker - Becoming Harpistic"All the teachers ever needed arrive unbidden, if we allow ourselves to become present." #captureMat Dryhurst"Art is a consensus network between humans. It's not pictures or whatever." #storytelling

Don't let Claude get lost in your Obsidian vault.

Give it the shape of your thinking.

Terminal

$ curl -fsSL enzyme.garden/install.sh | bash

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or install via Homebrew

Full setup guide →

scroll to discover

enzyme init

> cat VAULT_GUIDE.md | enzyme init

> Complete ✓

📦 #enzyme - Active product/research area - 51 files , 41 in last 12mo. Strong

tag #enzyme/pmf with 32 files showing focused investigation into

product-market fit

#enzyme/pmf , #ai-ux , #pkm , [[ecology of technology]]

📚 #storytelling - Core practice - 50 files , 46 active in 12mo. Consistent

recent use (12 days ago), appears to be both content-creation and analytical

framework

#editorial , #entrepreneurship , #productivity

📂 #ai-ux - Specialized domain - 56 files , 44 recent. Intersection of AI and

user experience design, active research area

#enzyme , #recsys , #pkm

📚 [[ecology of technology]] - Foundational framework - 61 all-time references

(most-linked concept in vault), philosophical lens across multiple domains

#ecology-of-technology , #pkm , #entrepreneurship , [[systems thinking]] +1

📂 folder:Readwise - Primary knowledge source - 600+ annotated articles,

books, podcasts, tweets. Organized by media type. Tags show thinking across

reading, not just import metadata

#pkm , #capture , #editorial , #enzyme

💬 #pkm - Knowledge work - 69 files , 47 recent. Marks passages on information

capture, understanding, fragmentation, and personal knowledge architecture

#capture , #enzyme , [[ecology of technology]]

Catalyzing...

The shape of what you've been building, in seconds.

Claude Code builds context from your codebase.

Enzyme builds context from your vault—

extracting core ideas from your tags, links, and notes.

Same question. Same vault. Different vocabulary.

Claude Code without Enzyme

› what have I learned the hard way about building?

● I'll search for lessons learned, mistakes, and insights about building products.

├ Read (reading notes/2021-startup-retro.md...)

├ Grep (searching for "lesson" "mistake" "learned"...)

└ Read (reading notes/build-trap-highlights.md...)

1. Ship Faster

From startup-retro.md: "spent too long on the dashboard before launching"

2. Talk to Users

From journal-2021-03.md: "finally talked to users today"

3. Stay Focused

From product-notes.md: "feature list keeps growing"

→ 3 files matched "lesson" and "mistake"

● Worked for 47s

What grep can find.

Claude Code with Enzyme

● I'll explore your vault for hard-won lessons—the ones that came from failure, not advice.

├ start_exploring_vault (loading slate entities...)

├ semantic_search (query: "hard lessons building products"...)

└ semantic_search (query: "failures mistakes learned"...)

✦ Catalysts: "complexity as avoidance" · "control vs trust" · "building to demo vs building to learn"

The Core Lesson

You build complexity to avoid asking vulnerable questions.

On Feedback

Your 2019 dashboard post-mortem and 2023 investor call reveal the same pattern: "I built what I wanted to demo" → "Every time I say users don't get it, I'm wrong."

On Simplicity

The feature you dismissed in 2021 became 80% of revenue. Your Readwise highlight from Shape Up: "Appetite over estimates"—you marked it, but didn't live it.

On Control

A 2020 journal entry about micromanaging echoes a marginalia note on Turn the Ship Around: "give control, don't take it." Both connect to a 2018 note about your father's business.

The throughline: building complexity is how you avoid the vulnerability of asking what people actually need—a pattern in your journals, your highlights, and how you were raised.

↗ Connected: journals, Readwise highlights, 2018 family notes

● Churned for 24s

What grep can't name.

2× fewer tokens

Broad exploration like this: · Pointed questions: 12× · Deep dives: 3–4×

Without catalysts, you're guessing at vocabulary. With them, you're using your vault's own language.

You've been curating all along.

It's not a perfect taxonomy. That's the point.

enzyme timeline

Your patterns over time - showing active, moderate, and dormant thinking patterns

Your patterns over time.

Claude already has voice. Enzyme gives it your ideas.

No SDK, no code. Just your archives, made conversational.

Early reactions

"Enzyme can surface connections I'd only make if I had instant recall... freeing me to use that energy to create and write... I think this is just the beginning."

life coach (NYC)

"Enzyme helps me build richer, more cohesive themes and think more deeply."

HCI researcher, ex-Spotify (Zurich)

"I have a workflow that I love with Readwise, Snipd, and Obsidian. Enzyme beats inertia by quickly drawing me deeper into the meaning of what I'm doing."

songwriter and pastor (NYC)

Enzyme sets up a memory layer for Claude Code.

Run it once. After that, when you're wondering, Claude reaches for what you've already captured.

Own where your thinking lives

Enzyme works with markdown. Plain text files that outlast any tool. Your corpus is your career; it should survive any platform shift. Tools like Obsidian make it easy to capture, organize, and sync. Readwise exports your highlights. Your thinking stays yours—no database, no lock-in.

See the setup guide

Obsidian · Markdown · Apple Notes (soon) → Claude.ai · Claude Code · Gemini CLI

Terminal

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Your files stay local. AI helps you explore them.

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